You need to do what you think is best. You might try a bar yourself first and see what you think. Nothing like being your own Crash Test Dummy, right?
I get the impression you've got quite a large batch of soap to deal with, which is unfortunate. I normally make a small batch -- maybe 16 oz / 500 grams of fats -- when I try a new ingredient. That means if the batch doesn't turn out well, I only have about 4 bars to deal with.
This is a big weakness of the "heat transfer" method, IMO. You don't necessarily know the batch is in trouble until it's too late to make a correction. If you'd warmed the beeswax and fats before adding the lye solution, you would have been able to verify the wax was fully melted before proceeding.