"... I don't know how long it takes for the CA and NaOH to make Sodium Citrate..."
It doesn't take very long, Gent. What's happening is the citric acid is mostly disassociating (breaking apart) into a citrate ion and a hydrogen ion. When you dissolve NaOH in water you're doing much the same thing -- the sodium hydroxide dissociates into a sodium ion and a hydroxide ion -- and that's pretty fast, hey? Same with the citric acid.
When the two are mixed, some of the citrate and sodium ions will quickly buddy up, but it's a loose association of ionic acquaintances. They will mingle, partner briefly, and split amicably with no marriage contracts being signed.
I tend to talk about NaOH + citric acid => sodium citrate as if it's a permanent connection between the two ions. This kind of black and white explanation is an introductory way of explaining these things -- if I get too deep into the techno-geek-speak, people's eyes glaze over and rightly so. But in reality, the actual situation is rather more chemically polyamorous and flexible.
"...I think those salts will find the balance they like eventually no matter which lye you react them with. If the ions "migrate" from one to the other you still have your balance at the molecular level, so just do what's easy...."
That's my suggestion too. Whether you add the KOH first and NaOH second or vice versa or both at once, it's no matter. The citrate will mingle happily as it likes.
"...You would still have to account for the addition in either the KOH or the NaOH..."
Spot on perfect advice -- I agree with Lee.