wetshavingproducts
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Here's the options the IRS gives for taking inventory losses on Publication 334: http://www.irs.gov/publications/p547/ar02.html#en_US_2013_publink1000225232
Loss of inventory. There are two ways you can deduct a casualty or theft loss of inventory, including items you hold for sale to customers.
One way is to deduct the loss through the increase in the cost of goods sold by properly reporting your opening and closing inventories. Do not claim this loss again as a casualty or theft loss. If you take the loss through the increase in the cost of goods sold, include any insurance or other reimbursement you receive for the loss in gross income.
The other way is to deduct the loss separately. If you deduct it separately, eliminate the affected inventory items from the cost of goods sold by making a downward adjustment to opening inventory or purchases. Reduce the loss by the reimbursement you received. Do not include the reimbursement in gross income. If you do not receive the reimbursement by the end of the year, you may not claim a loss to the extent you have a reasonable prospect of recovery.
So, unless our insurance reimburses us for the loss, then we just account for it when calculating the COGS at the end of the year.